tag:blogger.com,1999:blog-1405968300258104460.post7508224658546417773..comments2024-03-27T01:18:24.341-04:00Comments on Andy's Brain Blog: Unix for Neuroimagers: For Loops and Shell ScriptingAndrew Jahnhttp://www.blogger.com/profile/16435706598096921650noreply@blogger.comBlogger9125tag:blogger.com,1999:blog-1405968300258104460.post-17447705519284475672017-12-19T19:12:29.580-05:002017-12-19T19:12:29.580-05:00Hi Teodora,
I believe so; sorry for the late repl...Hi Teodora,<br /><br />I believe so; sorry for the late reply!<br /><br />-AndyAndrew Jahnhttps://www.blogger.com/profile/16435706598096921650noreply@blogger.comtag:blogger.com,1999:blog-1405968300258104460.post-59815184853015985562017-12-03T13:48:37.326-05:002017-12-03T13:48:37.326-05:00If i want to write a for loop for running multiple...If i want to write a for loop for running multiple higher levels at once(unix); would the same concept apply? so - <br /><br />foreach higherlevel (higherlevel1 higherlevel2)<br /><br />feat higherlevel1.fsf $higherlevel<br /><br />endTeodoraSthttps://www.blogger.com/profile/17907194360519758872noreply@blogger.comtag:blogger.com,1999:blog-1405968300258104460.post-92161949734793866352017-12-03T13:47:40.721-05:002017-12-03T13:47:40.721-05:00This comment has been removed by the author.TeodoraSthttps://www.blogger.com/profile/17907194360519758872noreply@blogger.comtag:blogger.com,1999:blog-1405968300258104460.post-1502220707793838412017-06-10T16:18:04.620-04:002017-06-10T16:18:04.620-04:00When you use the way you originally were doing, wh...When you use the way you originally were doing, what error did it give you?Andrew Jahnhttps://www.blogger.com/profile/16435706598096921650noreply@blogger.comtag:blogger.com,1999:blog-1405968300258104460.post-18727939571108836082017-06-05T14:14:18.535-04:002017-06-05T14:14:18.535-04:00Thanks for the reply!
I have the for loop inside...Thanks for the reply! <br /><br />I have the for loop inside a bash script. <br /><br />When I remove the single quotes, AFNI says:<br />** ERROR: selector syntax error 5 <br />can't decipher index codes Harshawardhanhttps://www.blogger.com/profile/12608311307194765680noreply@blogger.comtag:blogger.com,1999:blog-1405968300258104460.post-38927727054646140492017-06-05T13:43:52.156-04:002017-06-05T13:43:52.156-04:00Hey there,
In Bash, you don't need to escape ...Hey there,<br /><br />In Bash, you don't need to escape the brackets; remove the single quotes, and it should work.<br /><br />-AndyAndrew Jahnhttps://www.blogger.com/profile/16435706598096921650noreply@blogger.comtag:blogger.com,1999:blog-1405968300258104460.post-52936455109633552532017-06-04T17:18:04.327-04:002017-06-04T17:18:04.327-04:00Hi Andrew,
How do you go about executing AFNI com...Hi Andrew,<br /><br />How do you go about executing AFNI commands inside a for loop in say a bash script? I am having difficulty escaping the '[]' parts of the dataset name that are used to select a sub-brick. <br /><br />For example:<br /><br />for sub in ${sub_list}<br />do<br /> 3dbucket -aglueto outdata+tlrc indata+tlrc'[2]'<br />doneHarshawardhanhttps://www.blogger.com/profile/12608311307194765680noreply@blogger.comtag:blogger.com,1999:blog-1405968300258104460.post-67995371308034082792017-05-31T09:28:29.968-04:002017-05-31T09:28:29.968-04:00No problem! Glad it helps.
-AndyNo problem! Glad it helps.<br /><br />-AndyAndrew Jahnhttps://www.blogger.com/profile/16435706598096921650noreply@blogger.comtag:blogger.com,1999:blog-1405968300258104460.post-66223114022892614312016-04-30T03:08:59.098-04:002016-04-30T03:08:59.098-04:00HELLO,
I WANT WRITE A FOR LOOP (FOR NII IMAGE) TH...HELLO,<br />I WANT WRITE A FOR LOOP (FOR NII IMAGE) THAT MULTIPLY 7 IMAGE (INVARIANT) TO 4 IMAGE (VARIANT) FOR 37 SUBJECT(IN MATLAB OR BASH),IT IS VERY VITAL,IF IT IS POSSIBLE PLEASE GUIDE ME.<br />THANK YOU FOR YOUR ATTENTION Anonymoushttps://www.blogger.com/profile/14243369727674788110noreply@blogger.com